Basic Information
VIS ID
TVIS10014847
Fusion event
HBV-chr13 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25636086
Virus Sequence
Virus name
HBV
Reference genome
AP011098.1
Start
2391
Integrated sequence
CTTACAGACCACCAAATGCCCCTATCTTATCAACACTTCCGGAAACTACTGTTGTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCG| |CAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATCTCAATGTTAGTATCCCTTGGACTCATAAGGTGGGAAACTTTACTGGGCT
Host Sequence
Chromosome
chr13
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
104161305/103508955 (Hg38)
End
104161305/103508955 (Hg38)
Nearest miRNA
hsa-mir-1297/Upstream/1462951; hsa-mir-1267/Downstream/4022216;
Nearest TSS
ENST00000623511/Upstream/83755; ENST00000640578/Downstream/1956912;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/662542, chr13-CpG: 29/Downstream/2984105
Upstream sequence
ttcttttattttttatttatagtattgtaatttgttttttcttttttctcaaataatcttgctatgcttgtataaattttattattatttaaagaaccat
Downstream sequence
acttttgccttttaatattttttgattgaatatttttctatttcattgatttctaatcttatttttattGAGTAGTTTATACACCTAGTAATACCATACT
Reference
Fujimoto, A., et al. Whole-genome mutational landscape of liver cancers displaying biliary phenotype reveals hepatitis impact and molecular diversity. Nat Commun ,2015,6: 6120.
Curate