Fusion event
HBV-LOC105370232 integration
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Region type
HBVgp3 X protein;HBVgp4 precore/core protein
Integrated sequence
GTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATG| |CAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTT
End
63147362/62573229 (Hg38)
Nearest miRNA
hsa-mir-1297/Upstream/1373349; hsa-mir-1267/Downstream/3393101;
Upstream sequence
acattaattCCATTAGATCTGAATAAAAGAGTTAAAATAGcatcattgattgaacacttactgtaggtcaggcactattgaaagtacttcacaggtaata
Downstream sequence
attcattaaattttaaaactctgtgGggccaggcatggtggctcaagcctgtaatcccagcatttgggaggcctaggagggaggatcatgaggtcaggag
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.