VISDB Viral Integration Site DataBase

VIS ID

TVIS10014912

Fusion event

HBV-C1orf229 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Region type

HBVgp3 X protein

Start

1811

Orient

-

Integrated sequence

AAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAG| |CACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATC

Chromosome

chr1

Cytoband

q44

Reference genome

Start

End

247279144/247115842 (Hg38)

Orient

+

Location type

Promoter

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-486-3p ; hsa-mir-6721-5p ; hsa-mir-6789-3p ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-744-5p ; hsa-mir-3648 ; hsa-mir-146b-3p ; hsa-mir-6722-3p ; hsa-mir-1909-3p ; hsa-mir-134-3p ; hsa-mir-6775-5p ; hsa-mir-5090

Nearest miRNA

hsa-mir-101-1/Upstream/3769587; hsa-mir-3124/Downstream/86125;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/3387, chr1-CpG: 17/Downstream/60

Upstream sequence

GGGTCTCTGCCCGCTATCCCGGGAAGCCTGGGAGGGCAGCTCAGAGCTCTGGGAAGTGCCTCTTCCCAGCATCTGTCCACACTGTGCTCACCAGTGCCTT

Downstream sequence

GGCGTCATCCCCTGAGAGGTGGGCATATGTCCCTGTGGGCGGGTGACAGCAAGGTCATCACGGGGAGGGGGCGTGTCCCTGTGGGCGGGTGACAGCAAGG