VISDB Viral Integration Site DataBase

VIS ID

TVIS10015041

Fusion event

HBV-FABP4 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Region type

HBVgp3 X protein

Start

1798

Orient

-

Integrated sequence

TGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTG| |GTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTG

Chromosome

chr8

Cytoband

q21.13

Reference genome

Start

End

82390662/81478427 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-138-5p ; hsa-mir-369-5p ; hsa-mir-335-5p

Nearest miRNA

hsa-mir-12123/Upstream/1236954; hsa-mir-10400/Downstream/9727058;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/196977, chr8-CpG: 21/Downstream/43774

Upstream sequence

acagagttttactcttgttgcccaggctggagtgcaatggtgctatctcagctcactgcaacctccgcctaccagggtcaagctattctcctgcctcagc

Downstream sequence

TACATTTAAAACTACCTTAGGTTTCTGAGATACACCTACTTAACTGTAGCTATGGTAAAGAAGGATTTAATATTCAGTAATGGTACATACTTGTTATCTC