Basic Information
VIS ID
TVIS10015058
Fusion event
HBV-chrY integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
HBVgp3 X protein
Start
1711
Orient
-
Integrated sequence
GGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTC| |AAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAG
Host Sequence
Chromosome
chrY
Reference genome
GRCh37/hg19
Start
58993181/58993181 (Hg38)
End
58993181/58993181 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12120/Upstream/45513915;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/1789758, None/Downstream
Upstream sequence
GTTGTGCCAAATATTATGTGATTTTATCTCTTTTATGGTTTTGtattttaaattatattttcatattttatGTCATTAATTTACTGATCAATACTGTATC
Downstream sequence
atgcaactcttctctaggctctgcctacaaggtcctttgtgacatcactatgtattgatcatcccggtgatgtaacttttgtctcagctctgcctacagg
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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