Basic Information
VIS ID
TVIS10015070
Fusion event
HBV-chr4 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1675
Orient
-
Integrated sequence
ACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTC| |TCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTAC
Host Sequence
Chromosome
chr4
Cytoband
q28.3
Reference genome
End
133161933/132240778 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/6733471; hsa-mir-1305/Downstream/11102682;
Upstream sequence
acatatatgccatgttggtgtgctgcacccattaactggtcatttacattaggtctatctcctaatgctatccctcccccctcccccctccccgctcccc
Downstream sequence
ctctccaagactgcatttctagggatttgtggggactctatatttcttcctgtacaccagtcagtccctttctgaacatgtgtcattattgcagtacttt
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate