Fusion event
HBV-chr13 integration
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Region type
HBVgp1 Polymerase;HBVgp2 pre-S2/S
Integrated sequence
AATTCCACAACCTTCCACCAAACTCTGCA| |AGATCCCAGAGTGAGAGGCCTGTATTTCCCTGCTGGTGGCTCCAGTTCAGGAACAGTAAACCCTGTTCTGACTACTGCCTCTCCCTTATCGTCAATCTTC
End
98711747/98059493 (Hg38)
Nearest miRNA
hsa-mir-1297/Upstream/1632201; hsa-mir-1267/Downstream/149031;
Upstream sequence
GCCGCCCAGTTCACAGTGCTCCACTCCGTGACCCCAGTGACCCTCAGAGGCAGGCCATGTCTGTGTTGTAAAACTCTCTTcccaccggacccagaagtgg
Downstream sequence
acatctgacccaagctgggccaatcagatttcatctccaggagtttAACCCTGGCCCAGAGAACCCCTGAGGCTTGAGAAGTCTCCAGCTGAGCCCCATG
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.