VISDB Viral Integration Site DataBase

VIS ID

TVIS10015089

Fusion event

HBV-ANK3 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Region type

HBVgp1 Polymerase;HBVgp2 pre-S1/pre-S2/S

Start

2860

Orient

-

Integrated sequence

ATGGAAGGCGGGTATATTATATAAGAGAGAAACAACACATAGCGCCTCATTTTGTGGGTCACCATATTCTTGGGAACAAGATCTACAGCATGGGGCAGAA| |TCTTTCCACCAGCAATCCTCTGGGATTCTTTCCCGACCACCAGTTGGATCCAGCCTTCAGAGCAAACACCGCAAATCCAGATTGGGACTTCAATCCCAAC

Chromosome

chr10

Cytoband

q21.2

Reference genome

Start

End

62130894/60371136 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-218-5p ; hsa-mir-8088 ; hsa-mir-598-5p ; hsa-mir-216b-3p ; hsa-mir-8485 ; hsa-mir-603 ; hsa-mir-503-5p ; hsa-mir-34a-5p

Nearest miRNA

hsa-mir-1265/Upstream/3066577; hsa-mir-107/Downstream/3001821;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/464100, chr10-CpG: 60/Downstream/361891

Upstream sequence

CGGGATCCTTCCTTTCTCTTCCAACCACATTCAGTAAGTCATCATGTCCCATTAATTTTCAAAGCATTTCTATCTGTGCTCCCTACAATATCTGCCACAC

Downstream sequence

TTCTCAGTTTTCAAGACTCCTTCAATCTACACATCTGTCTCATCTCTACCCTCTGCCCTGGTAGATGTGCCCCTTCATAAGATCTCcaaaagaagacata