Fusion event
HBV-chr1 integration
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Region type
HBVgp4 precore/core protein
Integrated sequence
ATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTC| |ATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTTACTCTCG
End
80107938/79642253 (Hg38)
Nearest miRNA
hsa-mir-101-1/Upstream/2582051; hsa-mir-11399/Downstream/5491541;
Upstream sequence
ttggcctgttggccaaatttctggcacttgtagcaagctcctgggggaggaggttctggaagaacgcctggctgctgcggttcaggcgtttggaagtttt
Downstream sequence
tgtgtgctggagatgtggctggggtttgtctcacagtggaggcaagtaattgcaactcagaaatacattgctacttggctgcctctactctattattgta
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.