Fusion event
HBV-chrX integration
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Region type
HBVgp1 Polymerase;HBVgp4 precore/core protein
Integrated sequence
TTTTGGAAGAGAAACAGTTATAGAGTATTTGGTGTCTTTCGGAGTGTGGATTCGCACTCCTCCAGCTTATAGACCACCAAATGCCCCTATCCTATCAACA| |CTTCCGGAGACTACTGTTGTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGAT
End
22721029/22721029 (Hg38)
Nearest miRNA
hsa-mir-23c/Upstream/2703842; hsa-let-7f-2/Downstream/5774526;
Upstream sequence
ttccattcgagaccattcgatgattgcattcaattcattcgatgacgattccattcaattccgttcaatgattccattagattccatttgatgatgattc
Downstream sequence
atcatgcttggaattcattgtgttttctatatctgttcacattttccatcacttctgaaaatttcacatccTGGTGAGAATCCCAAAAGGAATGAATAGA
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.