VISDB Viral Integration Site DataBase

VIS ID

TVIS10015128

Fusion event

HBV-SP5 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Region type

HBVgp1 Polymerase;HBVgp2 pre-S2/S;HBVgp2

Start

469

Orient

-

Integrated sequence

TATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGC| |CCGTTTGTCCTCTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTATCCCTCCTGTTG

Chromosome

chr2

Cytoband

q31.1

Reference genome

Start

End

171571967/170715457 (Hg38)

Orient

-

Location type

Promoter

Fragile sites / regions

Target gene

Nearest miRNA

hsa-mir-128-1/Upstream/2132439; hsa-mir-10b/Downstream/4452176;

Nearest TSS

Nearest CpG islands

chr2-CpG: 363/Target, None/Upstream, None/Downstream

Upstream sequence

AGCGGGGCGCGGCGAGGGGCAAGGGCGGGGAGGGCCCCGGCGCTCAGAGCAGGCGCCAGGGAGGCAGGCTGGGCGGCCCTTCGTCCTCGCCTTCGGGTGT

Downstream sequence

CCATGCCTCGGCGGCGGCGTCCCGCTCCGCAGCCAGGGGCCTGCAAGCCGTAGCCATGGCCGCGGTGGCCGTCCTCCGGAACGACTCGCTGCAGGCCTTT