VISDB Viral Integration Site DataBase

VIS ID

TVIS10015140

Fusion event

HBV-STAU1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Region type

HBVgp3 X protein

Start

1673

Orient

-

Integrated sequence

GGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGAC| |TCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGT

Chromosome

chr20

Cytoband

q13.13

Reference genome

Start

End

47794911/49178374 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-132-3p ; hsa-mir-27a-3p ; hsa-mir-16-5p ; hsa-mir-877-5p ; hsa-mir-30e-5p ; hsa-mir-5011-5p ; hsa-mir-218-5p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-6513-5p ; hsa-mir-5089-5p ; hsa-mir-6728-5p ; hsa-mir-769-3p ; hsa-mir-450b-3p ; hsa-mir-222-5p ; hsa-mir-190a-3p ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-3147 ; hsa-mir-4425 ; hsa-mir-1290 ; hsa-mir-16-1-3p ; hsa-mir-4781-3p ; hsa-mir-218-2-3p ; hsa-mir-30d-5p ; hsa-mir-30c-5p ; hsa-mir-30b-5p ; hsa-mir-30a-5p ; hsa-mir-9-5p

Nearest miRNA

hsa-mir-103a-2/Upstream/2011316; hsa-mir-1-1/Downstream/685485;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/131462, chr20-CpG: 83/Downstream/9442

Upstream sequence

ATATCTATATAGTGCACACTTACCACTGCAATTTTCCCCAGTCAAGAATGCATACTAAAccaggcaccgtggctcaggcctgtaatcccagcactttggg

Downstream sequence

aggccaaggtgggccaatcacctgaagtcaggagtttgaggctaggctggccaacatggtgaaatcccatctctactaaaaatacaaaaattaggccggc