Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015227
Fusion event
HBV-FAM157A integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
HBVgp1 Polymerase
Start
2499
Orient
-
Integrated sequence
AAGGTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATCTCAATGTTAGTATTCCTTGGACTCATAAGGTGGGGAACTTTACTGGGCTTTATTC| |TTCTACTGTACCTGTCTTTAATCCTCATTGGAAAACACCATCTTTTCCTAATATACATTTACACCAAGACATTATCAAAAAATGTGAACAGTTTGTAGGC
Host Sequence
Chromosome
chr3
Cytoband
q29
Reference genome
End
197900733/198173862 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-let-7g/Upstream/499286;
Nearest TSS
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/16381, None/Downstream
Upstream sequence
ggggtttcaccatgttagccaggatggtctcaatctcctgaccttgtgatctgcccgcctctgcctcccaaagtgctgggattacaggcgtgagccaccg
Downstream sequence
gatgtgggtgagggtgaggatgaaggttagggttagggttagggttagggttagggttagggttagggttagggttagggttaggggtgtgggtgagggt
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.