C8orf34 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015230
Fusion event
HBV-C8orf34 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
HBVgp1 Polymerase
Start
2838
Orient
+
Integrated sequence
CTAGACACTATTTACACACTCTATGGAAGGCGGGTATATTATATAAGAGAGAAACAACACATAGCGCCTCATTTTGTGGGTCACCATATTCTTGGGAACA| |AGATCTACAGCATGGGGCAGAATCTTTCCACCAGCAATCCTCTGGGATTCTTTCCCGACCACCAGTTGGATCCAGCCTTCAGAGCAAACACCGCAAATCC
Host Sequence
Chromosome
chr8
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
69519927/68607692 (Hg38)
End
69519927/68607692 (Hg38)
Orient
-
Location type
Intronic
Target gene
C8orf34
Nearest miRNA
hsa-mir-124-1/Upstream/4228435; hsa-mir-10400/Downstream/5940851;
Nearest TSS
ENST00000518652/Upstream/74672; ENST00000325233/Downstream/17767;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/276124, chr8-CpG: 224/Downstream/1224171
Upstream sequence
atactcagaaaatactttgccatatttccattcaagtcacagagtggaacattcccattcataaagcaggtttgaaacactctttttggagtatctggaa
Downstream sequence
CTTGTACCTTGTAAATGAACCTACAAGACTGTTGAATATCAAAATCTGGAATCTGGAGAAATCTGTCCTATTATTTCTTACCCGCTGCTTTTGTCATCAA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate