C8orf34 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015231
Fusion event
HBV-C8orf34 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
HBVgp4 precore/core protein
Start
1942
Orient
+
Integrated sequence
ATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGG| |AGTTACTCTCGTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCCTGAGCA
Host Sequence
Chromosome
chr8
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
69523219/68610984 (Hg38)
End
69523219/68610984 (Hg38)
Orient
-
Location type
Intronic
Target gene
C8orf34
Nearest miRNA
hsa-mir-124-1/Upstream/4231727; hsa-mir-10400/Downstream/5937559;
Nearest TSS
ENST00000518652/Upstream/77964; ENST00000325233/Downstream/14475;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/279416, chr8-CpG: 224/Downstream/1220879
Upstream sequence
ATTCAGAAACTTGATCCAGCTAGATCTCATTCTTGTGAAGGAAGTCTGTGATTTTCAGTCAAAGCAGTAACTTCAGGAGAAGTATGTGAAAGTAAATCAA
Downstream sequence
cttccaagtagctggtaatataggcatgtgccatcaccacgcccagctaattttgtatttttagtagagacagggtttctccatgttggtcaggctggtc
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate