Basic Information
VIS ID
TVIS10015237
Fusion event
HBV-chr18 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
HBVgp4 precore/core protein
Start
2035
Orient
+
Integrated sequence
ACTGTGGAGTTACTCTCGTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTC| |CTGAGCATTGTTCACCTCACCATACTGCACTCAGGCAAGCAATTCTTTGCTGGGGGGAACTAATGACTCTAGCTACCTGGGTGGGTGTTAATTTGGAAGA
Host Sequence
Chromosome
chr18
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
72836901/75124945 (Hg38)
End
72836901/75124945 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1-2/Upstream/2271563;
Nearest TSS
ENST00000575820/Upstream/51402; ENST00000560661/Downstream/80568;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/36954, chr18-CpG: 111/Downstream/79207
Upstream sequence
CTAAGAATGAAGAGAAGCGATTACGGGATGCACGTGGCCCTCATGGGCCTTGGCTCTCCCAAAGAAGTTGGAGAGAAGATCAAGAGCGGTGGTGCTGCTA
Downstream sequence
TTTCACAAGTTTGCATTCGTTTTTTTCTAAGCCTTATGCCAGCAAGCCTGTAAGGTGCTGGCATCTGCCTCATTTTAAAGATGGGAGTGGTGGGGACCGT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate