VISDB Viral Integration Site DataBase

VIS ID

TVIS10015262

Fusion event

HBV-ZNF724 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Region type

HBVgp3 X protein

Start

1714

Orient

-

Integrated sequence

GACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAA| |GACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCAC

Chromosome

chr19

Cytoband

p12

Reference genome

Start

End

23422780/23239978 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-194-5p ; hsa-mir-802 ; hsa-mir-212-3p ; hsa-mir-132-3p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-5688 ; hsa-mir-495-3p ; hsa-mir-8054 ; hsa-mir-548l ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-6787-3p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-378a-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-4680-5p ; hsa-mir-4635 ; hsa-mir-3653-5p ; hsa-mir-7977 ; hsa-mir-876-3p ; hsa-mir-323a-5p ; hsa-mir-3622b-5p ; hsa-mir-4708-3p ; hsa-mir-5690 ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-3910 ; hsa-mir-640 ; hsa-mir-6131 ; hsa-mir-3663-5p ; hsa-mir-3674 ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-4732-5p ; hsa-mir-6832-5p ; hsa-mir-6500-3p ; hsa-mir-625-3p

Nearest miRNA

hsa-mir-10395/Upstream/2840624; hsa-let-7e/Downstream/11882722;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/35711, chr19-CpG: 32/Downstream/33794

Upstream sequence

ctgaactgaaggagatttagaaatgaaaagtcatagaaaatatcaagtaatccaggagttaaatatttgaaaaaaattaagaagataaaccgctagcaag

Downstream sequence

attagcaaagaaagaagatccaaataagcacaattaaaaatgacaacagggggccaggtgccgtgactcatgcctgtaatcctagcactttggaaggcca