hsa-mir-497-3p _LIHC.png
GABRB3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015266
Fusion event
HBV-GABRB3 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
HBVgp1 Polymerase;HBVgp2 pre-S2/S
Start
144
Orient
+
Integrated sequence
AGGCCTGTATTTCCCTGCTGGTGGCTCCAGTTCAGGAACAGTAAACCCTGTTCTGACTACTGCCTCTCCCTTATCGTCAATCTTCTCGAGGATTGGGGAC| |CCTGCGCTGAACATGGAGAACATCACATCAGGATTCCTAGGACCCCTTCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCGC
Host Sequence
Chromosome
chr15
Cytoband
q12
Reference genome
End
27031546/26786399 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1268a/Upstream/937574; hsa-mir-10393/Downstream/1640092;
Upstream sequence
tctcacaggcctctgaatactttatttttttcagtgtgtttttccactgtgctttagttcagatagccatattattatgttttcaagttGTCTTTTTAAA
Downstream sequence
ACCTTTATatttttatgtttacacagtaggtatatgtatttatgtggtacatattttggtacacgcatacaacgcatactgattacatcaaggtaaatgg
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate