Basic Information
VIS ID
TVIS10015268
Fusion event
HBV-chr1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
HBVgp1 Polymerase;HBVgp2 pre-S1/pre-S2/S
Start
3194
Orient
-
Integrated sequence
TCCTGCCTCCACCAATCGCCAGTCAGGAAGGCAGCCTACCCCGCTGTCTCCACCTTTGAGAAACACTCATCCTCAGGCCATGCAGTGG| |
Host Sequence
Chromosome
chr1
Cytoband
q41
Reference genome
GRCh37/hg19
Start
217378610/217205268 (Hg38)
End
217378610/217205268 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/5127583; hsa-mir-1182/Downstream/2912585;
Nearest TSS
ENST00000473358/Upstream/67513; ENST00000470448/Downstream/293496;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/66837, chr1-CpG: 21/Downstream/425657
Nearby gene
ESRRG(No orient, 67512)
Upstream sequence
agtctcacagcctctgccttttaattagagtgcatagtctatttatatttaatatgataattgatatgattgtgttaagtttatcatcttactatttgtt
Downstream sequence
tttaagttatctcagttgatttttcatcctctgtttagcttttcctatcttcttttgtgttaattgaatcattctttgttttccattttaatttcttaac
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate