Basic Information
VIS ID
TVIS10015271
Fusion event
HBV-chr1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
HBVgp1 Polymerase;HBVgp2 pre-S2/S;HBVgp2
Start
275
Orient
+
Integrated sequence
GATTCCTAGGACCCCTTCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAA| |TTTTCTAGGGGGAACTACCGTGTGTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAATCACTCACCAACCTCTTGTCCTCCAACTTGTCCTGGTTATCGC
Host Sequence
Chromosome
chr1
Cytoband
p12
Reference genome
GRCh37/hg19
Start
118200706/117658084 (Hg38)
End
118200706/117658084 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/563356; hsa-mir-1182/Downstream/28192503;
Nearest TSS
ENST00000473358/Upstream/52150; ENST00000471680/Downstream/229649;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/51038, chr1-CpG: 73/Downstream/271133
Nearby gene
TENT5C(No orient, 29694)
Upstream sequence
ttgagctcataccatgtgccaggcattgggctacaaagatgaaaaagacatcaatccATTTTTATTTTTCAATATATTTCCCAGAACTTGTGTCATCTTA
Downstream sequence
GGAGTGTCCGTGCTGCTGATTGGGCTCAGGGCACAGGTGCTGCTGGATGGTGTTTGGTGCTTTATGTGGTAACCTATTTCCCCAACAGGACATCATGGCT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate