FOXI2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015294
Fusion event
HBV-FOXI2 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23740984
Virus Sequence
Virus name
HBV
Reference genome
Not given
Region type
HBVgp1_polymerase-1
Start
1245
Host Sequence
Chromosome
chr10
Cytoband
q26.2
Reference genome
GRCh37/hg19
Start
129391432/127593168 (Hg38)
End
129391432/127593168 (Hg38)
Location type
5'
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Target gene
FOXI2
miRNAs that regulate target gene
hsa-mir-4291 ; hsa-mir-6794-3p ; hsa-mir-6515-3p ; hsa-mir-761 ; hsa-mir-3619-5p ; hsa-mir-214-3p ; hsa-mir-922 ; hsa-mir-4639-3p ; hsa-mir-1228-3p ; hsa-mir-6510-5p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-521 ; hsa-mir-6836-5p ; hsa-mir-6132
Nearest miRNA
hsa-mir-107/Upstream/1773346; hsa-mir-202/Downstream/2250131;
Nearest TSS
ENST00000439456/Upstream/43799; ENST00000388920/Downstream/144067;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/195866, chr10-CpG: 242/Downstream/142978
Upstream sequence
AAatggatgggtgggtggatggatggatggacagatgATACCATCAAAAGACAGAATGAATCTCTCACTGCATAGCAAAATTGGTTTTAAATAGCCCAAG
Downstream sequence
GAAAAAACTGGTTCCAAAGAAGTGTTGAAGGACCTATGCTTAGGaaaaacaaacacacaaacaaaaaacaacaaaaaaaccccaacaacaacaacaacaa
Reference
Khoury, J. D., et al. Landscape of DNA virus associations across human malignant cancers: analysis of 3,775 cases using RNA-Seq. J Virol,2013, 87(16): 8916-8926.
Curate