Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015298
Fusion event
HBV-ITGAD integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Region type
HBVgp4_precore/coreprotein
Start
1883
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
Start
End
31413431/31402110 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1225/Upstream/508125; hsa-mir-11401/Downstream/2761468;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/30292, chr16-CpG: 86/Downstream/25460
Upstream sequence
AGGTGGGGATGCCAAGAACAGCCCCCGGGCTCTGTTGAGCAGGAGCTGCAGGAGGGGGTTGGGCCCCCGCAGTGCATCTCCGATTCCTCCCCATTCCCCC
Downstream sequence
ACAGAGTGTCCACATCAAGAGATGGACATCGTCTTCCTGATTGACGGCTCTGGAAGCATTGACCAAAATGACTTTAACCAGATGAAGGGCTTTGTCCAAG
Reference
Khoury, J. D., et al. Landscape of DNA virus associations across human malignant cancers: analysis of 3,775 cases using RNA-Seq. J Virol,2013, 87(16): 8916-8926.