Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015299
Fusion event
HBV-TEAD1 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Region type
HBVgp3_Xprotein
Start
1748
Host Sequence
Chromosome
chr11
Cytoband
p15.3
Reference genome
Start
End
12711205/12689658 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-98-5p ; hsa-mir-320a ; hsa-mir-215-3p ; hsa-mir-503-3p ; hsa-mir-548at-5p ; hsa-mir-873-5p ; hsa-mir-101-5p ; hsa-mir-377-3p ; hsa-mir-1324 ; hsa-mir-5004-3p ; hsa-mir-1261 ; hsa-mir-4748 ; hsa-mir-4464 ; hsa-mir-624-3p ; hsa-mir-548e-5p ; hsa-mir-7150 ; hsa-mir-580-3p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-6077 ; hsa-mir-5580-5p ; hsa-mir-219a-1-3p ; hsa-mir-6868-5p ; hsa-mir-9500 ; hsa-mir-4267 ; hsa-mir-4445-3p ; hsa-mir-4722-5p ; hsa-mir-1286 ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-494-3p ; hsa-mir-548p ; hsa-mir-561-3p ; hsa-mir-5187-3p ; hsa-mir-6515-3p ; hsa-mir-1236-3p ; hsa-mir-3140-5p ; hsa-mir-4713-5p ; hsa-mir-3156-3p ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-4301 ; hsa-mir-181a-2-3p
Nearest miRNA
hsa-mir-210/Upstream/525891; hsa-let-7a-2/Downstream/3279875;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/14224, chr11-CpG: 198/Downstream/319125
Upstream sequence
GCTGCTAATTATGATTGTGACTACCATCATCCAGCAGCTGTGAAGTAGAGTGCCAAGTACCTCTTCTGTAGCATCTGTCTCTCTTTTTGAAGGAGGGGGT
Downstream sequence
CAGGAGCAGAATCTTATTTTTATTTTAGATTTTCAGTGTCTTTGCTTTGGGAAAGTTTAGTACagtagagggcaattgaacccctgtgcacccattatca
Reference
Khoury, J. D., et al. Landscape of DNA virus associations across human malignant cancers: analysis of 3,775 cases using RNA-Seq. J Virol,2013, 87(16): 8916-8926.