TECRL _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015300
Fusion event
HBV-TECRL integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23740984
Virus Sequence
Virus name
HBV
Reference genome
Not given
Region type
HBVgp1_polymerase-1
Start
1359
Host Sequence
Chromosome
chr4
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
63651241/62785523 (Hg38)
End
63651241/62785523 (Hg38)
Location type
3'
Target gene
TECRL
miRNAs that regulate target gene
hsa-mir-5010-3p ; hsa-mir-297 ; hsa-mir-190a-3p ; hsa-mir-223-5p ; hsa-mir-567 ; hsa-mir-511-3p ; hsa-mir-5011-5p ; hsa-mir-448 ; hsa-mir-4789-5p ; hsa-mir-466 ; hsa-mir-3941 ; hsa-mir-4789-3p ; hsa-mir-4643 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-8485 ; hsa-mir-329-3p ; hsa-mir-586
Nearest miRNA
hsa-mir-12113/Upstream/1862839; hsa-mir-1243/Downstream/3491301;
Nearest TSS
ENST00000502981/Upstream/619969; ENST00000507857/Downstream/342788;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1582440, chr4-CpG: 60/Downstream/563606
Upstream sequence
AGAAATAGTATAAAAGTCATAAAAACACTGCCATTTACTGTAGTAAAATGTGGGGCATTTTATTTGAGTTCCTAAGAAATTTCCTGTATTTAGAACTCTT
Downstream sequence
ACAAAACAAATGCCTCATCCcatacatctttcctttttcaaagagccattattaaacatttactagcacacAATCGCCCAGCATTATACTTCAGGGACTC
Reference
Khoury, J. D., et al. Landscape of DNA virus associations across human malignant cancers: analysis of 3,775 cases using RNA-Seq. J Virol,2013, 87(16): 8916-8926.
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