TECRL _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015302
Fusion event
HBV-TECRL integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23740984
Virus Sequence
Virus name
HBV
Reference genome
Not given
Region type
HBVgp3_Xprotein
Start
1373
Host Sequence
Chromosome
chr4
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
63651170/62785452 (Hg38)
End
63651170/62785452 (Hg38)
Location type
3'
Target gene
TECRL
miRNAs that regulate target gene
hsa-mir-5010-3p ; hsa-mir-297 ; hsa-mir-190a-3p ; hsa-mir-223-5p ; hsa-mir-567 ; hsa-mir-511-3p ; hsa-mir-5011-5p ; hsa-mir-448 ; hsa-mir-4789-5p ; hsa-mir-466 ; hsa-mir-3941 ; hsa-mir-4789-3p ; hsa-mir-4643 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-8485 ; hsa-mir-329-3p ; hsa-mir-586
Nearest miRNA
hsa-mir-12113/Upstream/1862768; hsa-mir-1243/Downstream/3491372;
Nearest TSS
ENST00000502981/Upstream/619898; ENST00000507857/Downstream/342859;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1582369, chr4-CpG: 60/Downstream/563677
Upstream sequence
tacacgaaacctcttttccttttgttcctctgtagaatcttaaagaacctttacctttgctcctagtaaatgaaattgcaccacgatggtgttggtgaaa
Downstream sequence
TGAAATTTACTAGCATATATAGGTATACATACACACATATGCATGTTATACAAACCCACATGCACATACACACAAAACAAATGCCTCATCCcatacatct
Reference
Khoury, J. D., et al. Landscape of DNA virus associations across human malignant cancers: analysis of 3,775 cases using RNA-Seq. J Virol,2013, 87(16): 8916-8926.
Curate