CLDN10 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015303
Fusion event
HBV-CLDN10 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23740984
Virus Sequence
Virus name
HBV
Reference genome
Not given
Region type
HBVgp2_Sprotein
Start
211
Host Sequence
Chromosome
chr13
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
96216582/95564328 (Hg38)
End
96216582/95564328 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA13D
Target gene
CLDN10
miRNAs that regulate target gene
hsa-mir-331-3p ; hsa-mir-6810-3p ; hsa-mir-6801-3p ; hsa-mir-6729-3p ; hsa-mir-4756-3p ; hsa-mir-3919 ; hsa-mir-3925-5p ; hsa-mir-486-5p
Nearest miRNA
hsa-mir-1297/Upstream/3074108; hsa-mir-1267/Downstream/862901;
Nearest TSS
ENST00000623511/Upstream/4178; ENST00000376795/Downstream/23346;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/11086, chr13-CpG: 89/Downstream/77024
Upstream sequence
TACCTAGAAGTGAAATTCTTATGTGTAGACCTAGTCCTTTCAGAATTAGCAAAGAAAATTGTTGTCTCAGTGGATAGAGGGAGCCTCCCAGAGGATGGAG
Downstream sequence
CAAGAAAGCTCTCTTCTTCCCATTATTATCTTACATTAATCTTACAAAAACTAGCTGCCACTAAATACCATCTCTCCCTGCAGGAGCATGTGTGTTTGGG
Reference
Khoury, J. D., et al. Landscape of DNA virus associations across human malignant cancers: analysis of 3,775 cases using RNA-Seq. J Virol,2013, 87(16): 8916-8926.
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