DPY19L2P1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015307
Fusion event
HBV-DPY19L2P1 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23740984
Virus Sequence
Virus name
HBV
Reference genome
Not given
Region type
HBVgp3_Xprotein
Start
1540
Host Sequence
Chromosome
chr7
Cytoband
p14.2
Reference genome
GRCh37/hg19
Start
35111018/35071406 (Hg38)
End
35111018/35071406 (Hg38)
Location type
3'
Fragile sites / regions
FRA7C
Target gene
DPY19L2P1
Nearest miRNA
hsa-mir-1183/Upstream/130572; hsa-mir-10399/Downstream/1847951;
Nearest TSS
ENST00000635602/Upstream/33135; ENST00000605778/Downstream/182225;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/33210, chr7-CpG: 97/Downstream/114345
Upstream sequence
TAATATGATTATGCTTGTCCTATGAAATATTAAGATAACTGATATAGTAAGAAAGAGCTGTTATTCTGACTTAATCCACTGGGAGGCTAGGATAGTTAAG
Downstream sequence
acacttatctgcaaatcaagaggaaagatcccagaagatactaaccctcctgatagataccttgatctccgacacctgtctgtggtacttgatgatggca
Reference
Khoury, J. D., et al. Landscape of DNA virus associations across human malignant cancers: analysis of 3,775 cases using RNA-Seq. J Virol,2013, 87(16): 8916-8926.
Curate