Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015318
Fusion event
HBV-VRK2 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Region type
HBVgp3_Xprotein
Start
1675
Host Sequence
Chromosome
chr2
Cytoband
p16.1
Reference genome
Start
End
57459913/57232778 (Hg38)
Location type
5'
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-1301/Upstream/1231983; hsa-mir-10b/Downstream/3154584;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1047374, chr2-CpG: 81/Downstream/813729
Upstream sequence
tcagctgtactcactctttgttgagtctcccacaattaccattgttcctggcccagacttcaatccggcctcccacactattccggataccacacctgaa
Downstream sequence
ccctatgactgtatctctctgatccatctaacattcaccccatttccccatatttccttctttcctgttcctcaccctgaacacacttggtttattgatg
Reference
Khoury, J. D., et al. Landscape of DNA virus associations across human malignant cancers: analysis of 3,775 cases using RNA-Seq. J Virol,2013, 87(16): 8916-8926.