hsa-mir-6844 _LIHC.png
GALNTL6 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015320
Fusion event
HBV-GALNTL6 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23740984
Virus Sequence
Virus name
HBV
Reference genome
Not given
Region type
HBVgp4_core/Eantigen
Start
2006
Host Sequence
Chromosome
chr4
Cytoband
q34.1
Reference genome
GRCh37/hg19
Start
173136585/172215434 (Hg38)
End
173136585/172215434 (Hg38)
Location type
Intronic
Target gene
GALNTL6
miRNAs that regulate target gene
hsa-mir-4309 ; hsa-mir-3198 ; hsa-mir-6844 ; hsa-mir-9-5p
Nearest miRNA
hsa-mir-12113/Upstream/1029142; hsa-mir-1305/Downstream/1052726;
Nearest TSS
ENST00000502981/Upstream/162989; ENST00000457021/Downstream/50720;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/401467, chr4-CpG: 154/Downstream/953358
Upstream sequence
gtgataaagcttgagcaacagagtgaaaccctgtctcaaaaaataaacaaaTGAAACAAGATTTAGGGTTATTTGGTTAAAAAAAAAAAACAGGAAAAAA
Downstream sequence
ttaaggatactatgtcttcttggagaactaaccagtttatcattttaatcttcctctcttcttgtgaagtctgacttgtctgaaattaatttagctactt
Reference
Khoury, J. D., et al. Landscape of DNA virus associations across human malignant cancers: analysis of 3,775 cases using RNA-Seq. J Virol,2013, 87(16): 8916-8926.
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