Basic Information
VIS ID
TVIS10015321
Fusion event
HBV-LINC00700 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23740984
Virus Sequence
Virus name
HBV
Reference genome
Not given
Region type
HBVgp3_Xprotein
Start
1659
Host Sequence
Chromosome
chr10
Cytoband
p15.3
Reference genome
GRCh37/hg19
Start
1863160/1820966 (Hg38)
End
1863160/1820966 (Hg38)
Location type
3'
Target gene
LINC00700
Nearest miRNA
hsa-mir-5699/Upstream/1179188; hsa-mir-107/Downstream/255053;
Nearest TSS
ENST00000439456/Upstream/83490; ENST00000435539/Downstream/192445;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/83142, chr10-CpG: 26/Downstream/494088
Upstream sequence
ctgaacaccctcacaagcattcttgtaagaaaagagcagagggagcttgggcagacacacaggagaagatgtgtgtccacagagactggagccatgtggc
Downstream sequence
cacaagccaaggagtgctggcagtcactaaaagctggaagagacaggaagacttccatcttggggccttcggagtgagtgcacctgtgctgaaacctcaa
Reference
Khoury, J. D., et al. Landscape of DNA virus associations across human malignant cancers: analysis of 3,775 cases using RNA-Seq. J Virol,2013, 87(16): 8916-8926.
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