VISDB Viral Integration Site DataBase

VIS ID

TVIS10015322

Fusion event

HBV-NCOR2 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HBV

Reference genome

Not given

Region type

HBVgp3_Xprotein

Start

1684

Chromosome

chr12

Cytoband

q24.31

Reference genome

Start

End

124912988/124428442 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-10a-5p ; hsa-mir-10b-5p ; hsa-mir-16-5p ; hsa-mir-9-5p ; hsa-mir-2110 ; hsa-mir-130b-5p ; hsa-mir-20a-5p ; hsa-mir-125b-5p ; hsa-mir-100-5p ; hsa-mir-30c-5p ; hsa-mir-4459 ; hsa-mir-6757-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-3178 ; hsa-mir-6799-5p ; hsa-mir-6785-5p ; hsa-mir-6883-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-25-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-658 ; hsa-mir-2277-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-6087 ; hsa-mir-6871-5p ; hsa-mir-4756-5p ; hsa-mir-1321 ; hsa-mir-4739 ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-34a-3p ; hsa-mir-1266-5p ; hsa-mir-3197 ; hsa-mir-3612 ; hsa-mir-3937 ; hsa-mir-4274 ; hsa-mir-4313 ; hsa-mir-4443 ; hsa-mir-4518 ; hsa-mir-4530 ; hsa-mir-4802-5p ; hsa-mir-510-5p ; hsa-mir-6085 ; hsa-mir-650 ; hsa-mir-6798-5p ; hsa-mir-6807-5p ; hsa-mir-6813-5p ; hsa-mir-6858-3p ; hsa-mir-7108-3p

Nearest miRNA

hsa-let-7i/Upstream/91200; hsa-mir-3612/Downstream/487105;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/1524, chr12-CpG: 28/Downstream/16884

Upstream sequence

GTTGTAAACAAAAACGTACCACGAGAAGTTTTAAAATGAAAAATTATGTTTTAATGGCCAGATTCAtctttggattgcctgcgtcagaatcaagtgggtg

Downstream sequence

gctgggtaaaaatgcggattcctgggctctgccccagaccagctgaatcagagtctctggTGAGAAACTGCTACTTAAACCAGCCGCCCCCTCCCTGGGG