Basic Information
VIS ID
TVIS10015324
Fusion event
HBV-MIR4457 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23740984
Virus Sequence
Virus name
HBV
Reference genome
Not given
Region type
HBVgp1_polymerase-1
Start
1369
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
1295462/1295347 (Hg38)
End
1295462/1295347 (Hg38)
Location type
3'
Target gene
MIR4457
Nearest miRNA
hsa-mir-4635/Upstream/232373; hsa-mir-10397/Downstream/13963;
Nearest TSS
ENST00000502646/Upstream/278; ENST00000605200/Downstream/26482;
Nearest CpG islands
chr5-CpG: 485/Target, None/Upstream, None/Downstream
Upstream sequence
cctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaacccta
Downstream sequence
GCCGCTCGCGCTCCCAGGGTGCAGGGACGCCAGCGAGGGCCCCAGCGGAGAGAGGTCGAATCGGCCTAGGCTGTGGGGTAACCCGAGGGAGGGGCCATGA
Reference
Khoury, J. D., et al. Landscape of DNA virus associations across human malignant cancers: analysis of 3,775 cases using RNA-Seq. J Virol,2013, 87(16): 8916-8926.
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