Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015326
Fusion event
HBV-NABP1 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Region type
HBVgp2_Sprotein
Start
433
Host Sequence
Chromosome
chr2
Cytoband
q32.3
Reference genome
End
192364684/191499958 (Hg38)
Location type
5'
Target gene
miRNAs that regulate target gene
hsa-mir-17-5p ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-95-5p ; hsa-mir-106a-5p ; hsa-mir-124-5p ; hsa-mir-130a-3p ; hsa-mir-106b-5p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-20b-5p ; hsa-mir-519c-3p ; hsa-mir-526b-3p ; hsa-mir-519b-3p ; hsa-mir-519d-3p ; hsa-mir-519a-3p ; hsa-mir-595 ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-1297 ; hsa-mir-548t-5p ; hsa-mir-4295 ; hsa-mir-4255 ; hsa-mir-3666 ; hsa-mir-4465 ; hsa-mir-5697 ; hsa-mir-548az-5p ; hsa-mir-4253 ; hsa-mir-4632-5p ; hsa-mir-4761-3p ; hsa-mir-4436b-3p ; hsa-mir-6735-5p ; hsa-mir-6862-5p ; hsa-mir-6879-5p ; hsa-mir-7843-5p ; hsa-mir-1277-5p ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-410-3p ; hsa-mir-5692a ; hsa-mir-548n
Nearest miRNA
hsa-mir-10b/Upstream/2366847; hsa-mir-1244-1/Downstream/15283276;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/253744, chr2-CpG: 88/Downstream/177889
Upstream sequence
cttttgggtgacataatTTCACATTTTGTGTGACAAAATTAAACAATTCAAATAAAAATAAAGTAAAATGACAGGAAAATTATAGAGGCAAAAATAAAAT
Downstream sequence
GTGTGTCGCATATGTGAATGTGGTGTGTTGAGTTTTTCACAGTTGAGGAGGAGTCTCCTTGTCCCTCACATGGCATGGTGGCATGGACCATTCACGCCAG
Reference
Khoury, J. D., et al. Landscape of DNA virus associations across human malignant cancers: analysis of 3,775 cases using RNA-Seq. J Virol,2013, 87(16): 8916-8926.