NDUFA4 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015329
Fusion event
HBV-NDUFA4 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23740984
Virus Sequence
Virus name
HBV
Reference genome
Not given
Region type
HBVgp3_Xprotein
Start
1562
Host Sequence
Chromosome
chr7
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
10697705/10658078 (Hg38)
End
10697705/10658078 (Hg38)
Location type
3'
Target gene
NDUFA4
miRNAs that regulate target gene
hsa-mir-145-5p ; hsa-mir-7-5p ; hsa-mir-16-5p ; hsa-mir-147b ; hsa-mir-186-5p ; hsa-mir-210-3p ; hsa-mir-147a ; hsa-mir-205-5p
Nearest miRNA
hsa-mir-339/Upstream/3591033; hsa-mir-10399/Downstream/7469142;
Nearest TSS
ENST00000635602/Upstream/697054; ENST00000422697/Downstream/44598;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/931492, chr7-CpG: 31/Downstream/121600
Upstream sequence
AGCCCTGTTGTGAATACAAGACAAATACAGTCTCTGCTGCGACCACAATCTAGAAGAAGGGGCAAGACTTCTCCTTTGGGGGATTCAAGAGGCAGGTTCT
Downstream sequence
GTTGAAGCTTTTATTTTTCTTACCTTATATTGGGCTTTTTTGCACCAAAGTGATTTGACTCTGCTCAGAAATTATGAAATTATGCAATTGTAAAAACCCT
Reference
Khoury, J. D., et al. Landscape of DNA virus associations across human malignant cancers: analysis of 3,775 cases using RNA-Seq. J Virol,2013, 87(16): 8916-8926.
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