DDX18 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015333
Fusion event
HBV-DDX18 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Region type
HBVgp3_Xprotein
Start
1584
Host Sequence
Chromosome
chr2
Cytoband
q14.1
Reference genome
End
118543232/117785656 (Hg38)
Location type
5'
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-1285-2/Upstream/4064288; hsa-mir-10b/Downstream/9637881;
Upstream sequence
agacgggagaatcacttgagcccaggaggtcaaggctgcagtgaaccatgatcatgccactatactccagcctaagtgtcaaaacaagaccctgtctcaa
Downstream sequence
agaaagaaaaaaaaaagaaGCAGTAAAAGCATAAAAGATTATTGAATATTACAGTAAAAAAAATTGATAAAACTCGGAGTACATCAAAGCCACTTAGGCT
Reference
Khoury, J. D., et al. Landscape of DNA virus associations across human malignant cancers: analysis of 3,775 cases using RNA-Seq. J Virol,2013, 87(16): 8916-8926.
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