Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015334
Fusion event
HBV-RNU6ATAC integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Region type
HBVgp1_polymerase-2
Start
2735
Host Sequence
Chromosome
chr9
Cytoband
q34.2
Reference genome
End
137028935/134163813 (Hg38)
Location type
3'
Target gene
Nearest miRNA
hsa-let-7a-1/Upstream/1111754; hsa-mir-126/Downstream/215598;
Nearest CpG islands
chr9-CpG: 163/Target, None/Upstream, None/Downstream
Upstream sequence
GCACAGAGGCCACCTTTTGCATAAGTGTACCCGGAGCAAGCCCAGCTCCGCGCCGCACTCCCGCCCCTTACTGGCCCCCCGCCTTTTTCCGTGGGCACCA
Downstream sequence
TTTTCTGTGAATGAATCAATGTTGAGCGGAAACTTCCGTCAGGCTTTGAACCAGGCCCTGAACGTTTGCGATGCTAGGGACGCGCCCGTCAACCCGCCGA
Reference
Khoury, J. D., et al. Landscape of DNA virus associations across human malignant cancers: analysis of 3,775 cases using RNA-Seq. J Virol,2013, 87(16): 8916-8926.