Basic Information
VIS ID
TVIS10015341
Fusion event
HBV-MIR4424 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23740984
Virus Sequence
Virus name
HBV
Reference genome
Not given
Region type
HBVgp3_Xprotein
Start
1660
Host Sequence
Chromosome
chr1
Cytoband
q25.2
Reference genome
GRCh37/hg19
Start
178593988/178624853 (Hg38)
End
178593988/178624853 (Hg38)
Location type
5'
Target gene
MIR4424
Nearest miRNA
hsa-mir-101-1/Upstream/1595408; hsa-mir-1182/Downstream/52896;
Nearest TSS
ENST00000473358/Upstream/82057; ENST00000608190/Downstream/26853;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/81632, chr1-CpG: 113/Downstream/99980
Upstream sequence
agtttaacctcaacaaccaaagacgttacacaaaaattactgtttagggcaggcagccaccaacattatcaaacatgttcatgacataactttaatccct
Downstream sequence
ccaatggttttttgtgtctatttcatcctacaagacacacagggaatgaattgttcTGGTAGTCCAGGGGAAGGGAAGTGCTTTGCCTGAGCGGTAGGTT
Reference
Khoury, J. D., et al. Landscape of DNA virus associations across human malignant cancers: analysis of 3,775 cases using RNA-Seq. J Virol,2013, 87(16): 8916-8926.
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