Basic Information
VIS ID
TVIS10015343
Fusion event
HBV-WASH8P integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr12
Cytoband
p13.33
Reference genome
GRCh37/hg19
Start
82418/23320 (Hg38)
End
82418/23320 (Hg38)
Location type
Intronic
Target gene
WASH8P
Nearest miRNA
hsa-let-7i/Downstream/1636995;
Nearest TSS
ENST00000382841/Downstream/14782;
Nearest CpG islands
None/Target, None/Upstream, chr12-CpG: 104/Downstream/7469
Upstream sequence
gactgtttggtggaagttagaaccatagTCGTAGCTGTCCTGGATGATGTTGCTGGAGGATATGAGAAGacggtaaggggagctctcaaggagttggaac
Downstream sequence
cacataggagacaaagccattagcagaaaatgctgcaagaagcaggaagaaaaacacatactcgagttcttccttcttcttctcctccaaccttgcacca
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate