Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015344
Fusion event
HBV-WASH5P integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
Start
End
62869/62869 (Hg38)
Location type
ncRNA_intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-let-7e/Downstream/9104;
Nearest TSS
Nearest CpG islands
None/Target, None/Upstream, chr19-CpG: 112/Downstream/7474
Upstream sequence
GTGCCACAGGAGGGGCAAGTGGAGGAGGAGAGGTGGCGGTGCTCCCCACTCCACTGCCAGTCGTCACTGGCTCTCCCTTCCCTTCATCCTCGTTCCCTAT
Downstream sequence
CTGTCACCATTTCCTGTCGTCGTTTCCTCTGAATGTCTCACCCTGCCCTCCCTGCTTGCAAGTCCCCTGTCTGTAGCCTCACCCCTGTCGTATCCTGACT
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.