Basic Information
VIS ID
TVIS10015345
Fusion event
HBV-LINC00266-1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
62918728/64287375 (Hg38)
End
62918728/64287375 (Hg38)
Location type
Promoter
Target gene
LINC00266-1
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-1-1/Upstream/210365;
Nearest TSS
ENST00000382410/Upstream/15893; ENST00000279067/Downstream/3010;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/16814, chr20-CpG: 92/Downstream/28920
Upstream sequence
gagtgggtggatggatgagtgagtggacagaagaatgggtaaatggatagatgaatggatgggtgggtgggtggataggagaatggataggtagataaat
Downstream sequence
agggttagggttagggttattggttagggttagggttagggttaggggttagggttaggagttagggttggggttagggttagggttcaggttcggggtt
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate