Basic Information
VIS ID
TVIS10015346
Fusion event
HBV-chrY integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chrY
Cytoband
q12
Reference genome
GRCh37/hg19
Start
59363425/57217274 (Hg38)
End
59363425/57217274 (Hg38)
Nearest miRNA
hsa-mir-12120/Upstream/43738008;
Nearest TSS
ENST00000430575/Upstream/31488784;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/13851, None/Downstream
Nearby gene
WASH6P(-5082) ;
Upstream sequence
cttgttgtggtctcaaggtcttatgtaattttgtgattatttttctattattggaaaattcaaatttaaaatttaaaacgggtgtgttttatatgtgggt
Downstream sequence
ttaggggttaggggttaggggttagggttagggttagggttagggtgtggtgtgtgggtgtgtgtgggtgtggtgtgtgtgggtgtggtgtgtgggtgtg
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate