Basic Information
VIS ID
TVIS10015347
Fusion event
HBV-chr1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr1
Cytoband
q31.2
Reference genome
End
193632089/193662959 (Hg38)
Fragile sites / regions
Nearest miRNA
hsa-mir-101-1/Upstream/526376; hsa-mir-1182/Downstream/2919454;
Upstream sequence
tgcaggtttattacatatatatacatgtgccatgttggtgtgctgcaaccattaactcgtcacttaacgttaggtatatttcctaatgctatccctccca
Downstream sequence
cctccccccaccccacaacaggccccggtgtgtgatgttccccttcctgtgtccatgtgttctcattgttcaattcccacctatgagtgagaacatgggt
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate