Basic Information
VIS ID
TVIS10015352
Fusion event
HBV-chr3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr3
Cytoband
p11.1
Reference genome
GRCh37/hg19
Start
90450679/90401529 (Hg38)
End
90450679/90401529 (Hg38)
Nearest miRNA
hsa-let-7g/Upstream/3175252; hsa-mir-12124/Downstream/5958435;
Nearest TSS
ENST00000440867/Upstream/1293853; ENST00000478400/Downstream/3509628;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1286572, chr3-CpG: 39/Downstream/3572181
Upstream sequence
ATACAACTAAAACTAAAATGAGATTGGATTTAGTGAGCTGTCCAGTGACTCAATATCCCTAGGGCAAAGAAATAGTACAAACTGCAAAGAGCTGTTTACA
Downstream sequence
gagttgaatgcacacaccacaaagaagtttctgagaatgcttctgtctagtttttatgtgaagatattccggtttccaacgatgtcctcaaagcagtcca
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate