Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015354
Fusion event
HBV-KCNIP4 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr4
Cytoband
p15.2
Reference genome
Start
End
21872886/21871263 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-12113/Upstream/406505; hsa-mir-12115/Downstream/644049;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1170550, chr4-CpG: 95/Downstream/77199
Upstream sequence
tgctgcaggctccgtggagggtcccttccccgctttttccagcttctggaggcgcttgcaggcctgggctcgaggccctccctcccttttcagcctcaga
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.