Basic Information
VIS ID
TVIS10015355
Fusion event
HBV-LOC101929583 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr9
Cytoband
q13
Reference genome
GRCh37/hg19
Start
69711099/64698681 (Hg38)
End
69711099/64698681 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA9F
Target gene
LOC101929583
Nearest miRNA
hsa-mir-101-2/Upstream/23464846; hsa-let-7a-1/Downstream/6111294;
Nearest TSS
ENST00000422679/Upstream/329086; ENST00000464913/Downstream/66854;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/209874, chr9-CpG: 309/Downstream/74175
Upstream sequence
gtgtgtactcaactgacagagttgaacctttcttttgatagagcagttttgaaacactctttttgtagaatctgcaagtggatatttggatagctttgag
Downstream sequence
aagtaattcccattctagaaatgtatattatgaaaatacatgcacagtatgcaaatgtatacaagtataagggtgtccattgtagtattatttgtgttaa
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate