Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015358
Fusion event
HBV-ASB12 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chrX
Cytoband
q11.2
Reference genome
Start
End
63450982/64231102 (Hg38)
Location type
Promoter
Target gene
Nearest miRNA
hsa-let-7f-2/Upstream/445015; hsa-mir-105-1/Downstream/1787768;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/24792, chrX-CpG: 34/Downstream/163975
Upstream sequence
ggcagtaagaaaggaaggaagCAGAGAACAAGACAGAaaagagggaaggaaggagagagaaaggaagcagagaagaaaggagggaggaagaaaaaaggga
Downstream sequence
cctccccccaccccacaacaggccccggtgtgtgatgttccccttcctgtgtccatgtgttctcattgttcaattcccacctatgagtgagaacatgcag
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.