ZFYVE1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015361
Fusion event
HBV-ZFYVE1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr14
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
73450075/72983367 (Hg38)
End
73450075/72983367 (Hg38)
Location type
Intronic
Target gene
ZFYVE1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-125b-5p
Nearest miRNA
hsa-mir-208a/Upstream/466469; hsa-mir-1185-1/Downstream/775380;
Nearest TSS
ENST00000550708/Upstream/4142; ENST00000525161/Downstream/3577;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/56459, chr14-CpG: 25/Downstream/43570
Upstream sequence
tacatgtgccacgttggtgtgctgcacccattaactcgtcatttacattaggtgtatctcctaatgctatccttcccccctcccccccaccccaccacag
Downstream sequence
gcctcgatgtgtgatgttcccccccttcctgtgtccaagtgttctcattgttcaattcccacctataagtgagaacatgcggtgtttggttttttgtcct
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate