KDM6A _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015362
Fusion event
HBV-KDM6A integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chrX
Cytoband
p11.3
Reference genome
GRCh37/hg19
Start
44801341/44942096 (Hg38)
End
44801341/44942096 (Hg38)
Location type
Intronic
Target gene
KDM6A
miRNAs that regulate target gene
hsa-mir-218-5p ; hsa-mir-6509-5p ; hsa-mir-6858-5p ; hsa-mir-4689 ; hsa-mir-1224-5p ; hsa-mir-3915 ; hsa-mir-526b-5p ; hsa-mir-3605-5p ; hsa-mir-3679-5p ; hsa-mir-1185-5p ; hsa-mir-6719-3p ; hsa-mir-4526 ; hsa-mir-3660 ; hsa-mir-6730-3p
Nearest miRNA
hsa-mir-1587/Upstream/5104483; hsa-let-7f-2/Downstream/804061;
Nearest TSS
ENST00000429181/Upstream/68381; ENST00000451692/Downstream/117186;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/67989, chrX-CpG: 20/Downstream/215636
Nearest cancer related gene
KDM6A(TSG, No orient, 0)
Upstream sequence
tgatggtgaggcaggagaggaggacgaagaggtagtggtggaaggtgacagaatgaaggaaaaggatgaaggaaagaaggatggagggaaaacaaggatg
Downstream sequence
caatctcggctcactgcaacctctgcctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggtgcgcgccaccacgccca
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate