Basic Information
VIS ID
TVIS10015363
Fusion event
HBV-chr11 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr11
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
46180220/46158669 (Hg38)
End
46180220/46158669 (Hg38)
Nearest miRNA
hsa-mir-129-2/Upstream/466893; hsa-let-7a-2/Downstream/217733;
Nearest TSS
ENST00000527297/Upstream/35096; ENST00000533793/Downstream/13278;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/15368, chr11-CpG: 101/Downstream/79044
Upstream sequence
CTGAGAAGAAAAAGGGAGAAAGAGAGAAAGCAAAAGTTTTTCTAAATCCATCTATGCCAATTCTAGACAACTCTTGGAATCTCCTTTTGGTTGGGTTGCC
Downstream sequence
CTGTCAGTAATCAATATGGGCTGTAAATCCTTGCAATAATCCAAGAAGGGGCCTCAGTGATTAAATTAACTCTTTAGTCTTGGCTGTGCTCTGAAACCTG
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
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