DIXDC1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015364
Fusion event
HBV-DIXDC1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr11
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
111827459/111956735 (Hg38)
End
111827459/111956735 (Hg38)
Location type
Intronic
Target gene
DIXDC1
miRNAs that regulate target gene
hsa-mir-615-3p ; hsa-mir-16-5p ; hsa-mir-582-3p ; hsa-mir-582-5p
Nearest miRNA
hsa-mir-10392/Upstream/443220; hsa-let-7a-2/Downstream/1493288;
Nearest TSS
ENST00000527297/Upstream/19315; ENST00000614104/Downstream/20171;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/19256, chr11-CpG: 45/Downstream/20468
Upstream sequence
gctcatgcctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggagtttgagaccagcctggccaacatgatgaaaccccgtc
Downstream sequence
tctactaacaatacaaaaattagctaggtgtggtggtgtgagcctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacctgggaggc
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate